Cubic Genomics Project Information
| Project ID |
Kraken231229112618_2 |
| Sample Name | CH3375_S26_L001 |
| Sequence Type | Paired-End |
| Execute date | 2023 12/29 11:29:07 |
| P.I. | Dr.Chen AH |
| ProjectPath | /project/Kraken231229112618_2/ |
| Backup Path | /backup/ |
| Classifier | db_k2all |
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Taxonomy result
| Total Sequences Processed |
131134 |
| Sequences Classified |
130423 |
| Sequences Unclassified |
711 |
| Class | Percentage(count) |
| Total | 130423.0 |
| Arachidicoccus soli | 13.74%(17926) |
| Burkholderia stabilis | 1.24%(1619) |
| Homo sapiens | 1.08%(1407) |
| Phocaeicola vulgatus | 0.92%(1200) |
| Burkholderia pseudomallei | 0.75%(982) |
| Burkholderia thailandensis | 0.70%(907) |
| Prevotella copri | 0.63%(828) |
| Burkholderia multivorans | 0.48%(630) |
| Phascolarctobacterium faecium | 0.46%(606) |
| Burkholderia cenocepacia | 0.44%(577) |
Total Species-level Taxonomic Categories Identified:476.
This table shows the top of classifications.
Note: The "Other" category in this pie chart is the sum of all classifications with less than 1 % abundance.
| Class | Percentage(count) |
| Total | 130423.0 |
| Burkholderia | 64.13%(83645) |
| Arachidicoccus | 13.75%(17931) |
| Phocaeicola | 1.47%(1913) |
| Sphingomonas | 1.43%(1861) |
| Bacteroides | 1.29%(1684) |
| Prevotella | 1.12%(1460) |
| Homo | 1.08%(1407) |
| Bacillus | 0.64%(829) |
| Phascolarctobacterium | 0.46%(606) |
| Faecalibacterium | 0.44%(578) |
Total Genus-level Taxonomic Categories Identified:327.
This table shows the top of classifications.
Note: The "Other" category in this pie chart is the sum of all classifications with less than 1 % abundance.
Supplement
Pipeline Information
Fastp : v0.23.2 https://github.com/OpenGene/fastp
Kraken2 : v2.1.3 https://github.com/DerrickWood/kraken2/blob/master/docs/MANUAL.markdown
Database Information
Source: https://benlangmead.github.io/aws-indexes/k2
db_k2all: PlusPFP-16
db_SILVA132: SILVA 132
db_SILVA138: SILVA 138
db_RDP: RDP 11.5
db_Greengenes: Greengenes 13.5
Samples Information
| SampleName | R1 | R2 |
| CH3375_S26_L001 | raw/CH3375_S26_L001_R1.fastq.gz | raw/CH3375_S26_L001_R2.fastq.gz |
